PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014381.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 240aa    MW: 26938.6 Da    PI: 8.8901
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014381.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.6e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed++l+d++k +G g+W++ ++  g++R++k+c++rw +yl
      Pbr014381.1 13 KGAWSKQEDQKLIDYIKTHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 60
                     79********************************************97 PP

2Myb_DNA-binding52.21.4e-1666110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
      Pbr014381.1  66 RGNFEQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                      899*******************.*********.***********987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-24463IPR009057Homeodomain-like
PROSITE profilePS5129417.411860IPR017930Myb domain
SuperFamilySSF466891.2E-2811107IPR009057Homeodomain-like
SMARTSM007171.8E-141262IPR001005SANT/Myb domain
PfamPF002492.4E-151360IPR001005SANT/Myb domain
CDDcd001673.99E-111560No hitNo description
PROSITE profilePS5129426.30561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-2664116IPR009057Homeodomain-like
SMARTSM007175.1E-1565113IPR001005SANT/Myb domain
PfamPF002496.1E-1566110IPR001005SANT/Myb domain
CDDcd001671.26E-1068111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRKPCCEKEG TNKGAWSKQE DQKLIDYIKT HGEGCWRSLP KAAGLHRCGK SCRLRWINYL  60
RPDIKRGNFE QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLIKMGI  120
DPNNHRLNQI IPRPNPQNNC VSPAATSSGS MSNINACTKT PLKSSDDQID HRASEAASVL  180
EDETSGPSSR DLNLDLTIAF PEPSLHVEEG MPKLIKGSNT TAREIETNLQ HLPTLVLFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28131157108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7727880.0KF772788.1 Malus hybrid cultivar cultivar Radiant MYB111 mRNA, complete cds.
GenBankKJ0263650.0KJ026365.1 Malus spectabilis MYB111 mRNA, complete cds.
GenBankKJ0263660.0KJ026366.1 Malus micromalus MYB111 mRNA, complete cds.
GenBankKJ1268580.0KJ126858.1 Malus hybrid cultivar MYB3 (MYB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371802.11e-179PREDICTED: transcription repressor MYB6-like
SwissprotQ388516e-77MYB6_ARATH; Transcription repressor MYB6
TrEMBLW5S7041e-176W5S704_9R
TrEMBLX2GMH51e-176X2GMH5_MALMI; MYB111
TrEMBLX2GR611e-176X2GR61_9R
STRINGVIT_14s0006g01620.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.16e-77myb domain protein 6